rs52207947 SNP Detail

Summary

• ID
  rs52207947
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30214296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTGAACA CGGGACGACA
  GTTAGAGATG CGGAACCGCG GTTAAGAGGG TCCAGGATGG CATGGCTGGG AGTTGGGAGA
  GATGGCTGAA CGGTTAGGAG CACGGGCTGC CCACCCACCC CAGTGTCTTG ATTCTTAGCA
  CCCACAGGGT AGATCACACG CCCCTTTAAC TCCAGTTCCT CTCTTTTGTC TATCGTGGAC
  A
  TTAGGAGCCC GTGTGCTGCG CTTACATACA TACAAGCAAA ATATTCATAC ACATAATTAA
  TATAAATAAT AAATAAAAAC TAAGAGATTC TGGCTGGCCT GAAGTTCTGG AGCACACAAG
  GAGGAAGGAG AGTCAACTGA AACCCTTGGG TCAACATCTC TGAACCTTCG CTATGAGATG
  GTGGGGTCGG GTTGGGGGAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148681210	ENSMUSSNP3999733	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52207947					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30214296 () rs orientation: forward

Symbol	Name	Function Class
Arhgap33os	Rho GTPase activating protein 33, opposite strand	251 bp upstream
Prodh2	proline dehydrogenase (oxidase) 2	1469 bp downstream
Tssr2186	transcription start site region 2186	358 bp upstream
Tssr65778	transcription start site region 65778	274 bp upstream