rs52208630 SNP Detail

Summary

• ID
  rs52208630
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125219211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGAATG GACTTTCAAT
  AGTTATCCTT TGGTCTTTAC TTGCAGACAA TAATGCATAT GTAGTGTATG CATGCAGTGC
  AAGTACACAC ACACACACAC ACACACACAC ACACACACAC ACACATATTC TCACATGCAT
  TCACACATAC ACACACACAC ATAAATGAAT AATAAAAAAT GTTTTAATCA ATCTATGTAC
  M
  GTTGATTATT TAAGTAGACC AGGAACTTTA AATCACTTTT TAGTTACTTT ATTATATGGC
  ATGGTCATAT AACAGAAAGA TGTGAAAATG AATTTCAATA CAAGGAAAAG CAATTCATTT
  TATGTTATAT AAAGCAAAAA TAATAGATAA ATTTTATCTA TAAAAATTTA TCTATTGTGC
  AACCAATGCT TGAGAAAATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135808262	ENSMUSSNP3117980	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320936337	CHEV_3_125128480	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52208630					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125219211 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	615 bp proximal