rs52210096 SNP Detail

Summary

• ID
  rs52210096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:93887143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTACCG TGGCCGCGTC
  TGGGGAGGCC GCGCCGGGGC TTCGGCCCAG GCCTAAGCTA AGGCTGAGGG ACAATCCAAT
  CACGTATAAG CTCTGGGCAG AGTCGGGAAA ACCAAGCGTT ATTCCTGGGT TAGTGTTTGC
  CAAGCTGACA CAGGCAGGCT AGTTCGTTCC GGTTGTTCTT TCCCCCTTTC CTTTCTTTCC
  Y
  GGCCCTCTCC TCCTCTCCTT TCACTGGCTT CTCTTTCTTT CCTTCCTTCC ATACCAGTCC
  ATGCTGGTCT TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCCCTCTTTC TCTTTCTTTC TCTCTCTCTA TCTCTCCTTC TTCTTCTTCT TCTTCTTCTT
  CTTCTTCTTC TTCTTCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148576887	ENSMUSSNP3795012	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52210096					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:93887143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8493	CpG island 8493	37 bp distal
Cpgi8494	CpG island 8494	416 bp proximal
Gm31175	predicted gene, 31175	1140 bp upstream
Gm60844	predicted gene, 60844	1182 bp upstream
Rr520041	regulatory region 520041	1928 bp distal
Rr520042	regulatory region 520042	1343 bp distal
Rr520043	regulatory region 520043	1193 bp distal
Rr520044	regulatory region 520044	692 bp distal
Rr520045	regulatory region 520045	476 bp proximal
Rr520046	regulatory region 520046	1400 bp proximal
Sim2	single-minded family bHLH transcription factor 2	Intron
Tssr139539	transcription start site region 139539	1350 bp downstream
Tssr139540	transcription start site region 139540	1034 bp downstream