rs52210729 SNP Detail

Summary

• ID
  rs52210729
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121137426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTGCACCC ACACCCACAG TAAGCAAAAT AGACAAGATG
  CTCACTGGTT ACTTAGAAAG GAATGACTGC TGATAAGGTT CAGTTTTAAG ATCTCTCTCT
  T
  TCTCTCTCTC TCTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG CTCTTGTAAC
  ACACACTCAC AGTGGTTGTT ACATTTAGAA ACTTTAGCC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	ST/bJ
ss359471628	MGP_WTSI_3_121046695	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	ST/bJ
rs52210729					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359471628	MGP_WTSI_3_121046695	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121137426 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	within coordinates
Gm33310	predicted gene, 33310	1176 bp upstream
Gm66111	predicted gene, 66111	415 bp upstream
Rr367544	regulatory region 367544	1243 bp upstream
Tssr35413	transcription start site region 35413	440 bp upstream
Tssr35414	transcription start site region 35414	406 bp upstream