rs52211830 SNP Detail

Summary

• ID
  rs52211830
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134947283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAAATGA AAGGAACGAA
  GTTGTGAAGT TCAGCACACC GAGACCAACC ACTGGGGGGC AGCAGCAGAG CAGCAGAAAG
  TCATCTGTCT AGAAGCTAGG AGGGCTGCTT AGCACTCCAT CTCTATCTCT AAGAAGCTAT
  TCAAAACACA AACAAAAAAG CAGTATAGTA TACACAGCTG AAAATTAATT ATATTAAAAT
  W
  AAAAATAATA CTTTTGGCCT AAGAAAATAT GGAAATGAAC ACCTGCAGTT CGTGGAAATA
  CAAACTGGTA CAGACTTTGA AATTTTGGCA AAATGCATAA AGTAGCTAGA GATGGTGGTA
  CGGGCTATAA TCTGCATCCA GGAGAGCTGC AGCCAACAGT AAGACACCGT CTCAAAAGGA
  CGAGGAAAGG TGCAAACCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147541645	ENSMUSSNP4272783	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
ss321351239	CHEV_4_134775887	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52211830					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134947283 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Tssr43965	transcription start site region 43965	1318 bp upstream