rs52212489 SNP Detail

Summary

• ID
  rs52212489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133981077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACATGT ACACACACAA
  ACACACGTGT ACACACATGT ATATGCACAT ATACACACAG TCATACATGA TCACACATAT
  ACACACACGT ATATGCACAA ACATACGCAC ATGCACACAT AAATGCATGC ATACATACAT
  ATACATAGAC ACCTGTGCAC ACATGCATAC ATATACACAG ACATAAACTC ATATATACAT
  R
  TACACACATA CACACAGATG TGTACACACA AATACATACA TGAACACACA TGCATACACA
  CATATCCACA CAAAGAGCAA GAACCTTCTT CAAACGTAAA GCATAGTATA TTATACATAT
  ATAAAAAAGG AATATCTGAA AATTTTGATT AAAATATGGA GATAAAATAC TTACAAATAT
  TATTGCAAGC TACTAATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147630479	ENSMUSSNP196148	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320512725	CHEV_2_133964893	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52212489					SNP	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133981077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12318	CpG island 12318	1334 bp distal