rs52212504 SNP Detail

Summary

• ID
  rs52212504
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89361510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGACAGTTT CCCAAACACA TCCAAGCCTC AGTTTCCCCC
  TGTGGGCAAT TGATCCTTTT GCTAAGCTCC TTGGTTTTTT GTTTTTTTAG TTTTTTGAGA
  M
  AGAGTTTCTC TGTATAGCCC TGGCTGTCCT GGAACTCACT CTGTAGACCA GGCTGGCCTC
  GAACTCAGAA ATCTGCCTGC CTCTGCCTCC CAAGTGCTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145481131	ENSMUSSNP2916314	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52212504					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89361510 () rs orientation: forward

Symbol	Name	Function Class
Rr178502	regulatory region 178502	1710 bp distal
Rr187078	regulatory region 187078	within coordinates
Rr382438	regulatory region 382438	within coordinates
Snx20	sorting nexin 20	within coordinates
Tssr82357	transcription start site region 82357	1094 bp downstream
Tssr82358	transcription start site region 82358	1177 bp downstream
Tssr82359	transcription start site region 82359	1235 bp downstream
Tssr82360	transcription start site region 82360	1270 bp downstream