rs52213843 SNP Detail

Summary

• ID
  rs52213843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAATAGA TACTGTTCCC
  TTAGTGCAAG AACAGATTTT ATTAATTTTA ACCCATGTGT CACTTAAAAT CATTCCTAAC
  TAGGGATTAA TCCACTCTTA TATGAGTCTT CATTTCCCAG CTAGCCTTGA TCTGTACACG
  TGCCCCTTTT CTTCCTCTGA GTACAGTAAC TGCGGCTAGG TCCAATACAA AACCAAACAA
  R
  AACAAAACAA AGACAACAAA TAAAAAACAA CACTAGCCAA AATAGCAAGA CCAGAACACG
  AGGCTAGAGG GGAATTGTAC CAACACAAAC ATCCTCAGAA ACTGAGCATT CACGGTCTGG
  CCGCAGAAAT CCCCGCCATT CACAACCAAC CTGGGATGGG TTTATGATGC CAGCTACATG
  GAAGGCTGAG GCAGGAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132716385	ENSMUSSNP217667	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52213843					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883201 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1166 bp proximal
Krtap17-1	keratin associated protein 17-1	859 bp downstream
Tssr110721	transcription start site region 110721	1617 bp downstream