rs52214261 SNP Detail

Summary

• ID
  rs52214261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:94885464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCACACATA CACACATAAC AATACCATAT ACATTTCTTA
  CAATTAGGCA AAGTGTTCAA GAAGCTTAAA AAGAGTTAAA GTGAGCACAG GTTTGGTTGG
  Y
  TTAGTTCTTT TTAGGACAGA AGCTGACAAA ATCAAAACAA CAACAACAAC AATGAAAATA
  AAGAAAAGAA AAAGAAAAGA AAAGGAACCC CCCAAATATT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63596441	NES17038046	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52214261					SNP	T	T	T	T	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63596441	NES17038046	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:94885464 () rs orientation: forward

Symbol	Name	Function Class
Gm23129	predicted gene, 23129	445 bp upstream
Gm52203	predicted gene, 52203	1018 bp downstream
Rr391133	regulatory region 391133	612 bp downstream
Tmem117	transmembrane protein 117	within coordinates