rs52215231 SNP Detail

Summary

• ID
  rs52215231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158223573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTACACAGA GAAATCTTCT GTCTCAAATA AACAAAACAA
  AACAAAAAAT AAATAATTTA AAAAAAAGAT GTCACGTGTA GTCAATTATC TTTATGGAAA
  R
  TGTCATGACT TAAGCTTTAT TATGTTAAAC TACCTGGTAT CAGACTCTTG AAGTTTGAAC
  CAACACTTAG CCGGGCGATG GTGGCGCACG CCTTTAATC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148114620	ENSMUSSNP6431928	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320588873	CHEV_2_158207389	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52215231					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158223573 () rs orientation: forward

Symbol	Name	Function Class
Gm25129	predicted gene, 25129	1987 bp downstream
Rr397444	regulatory region 397444	1572 bp downstream
Rr568752	regulatory region 568752	1482 bp distal
Rr568753	regulatory region 568753	1726 bp distal
Rr568754	regulatory region 568754	1688 bp distal
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	255 bp downstream
Tssr21318	transcription start site region 21318	517 bp upstream
Tssr21319	transcription start site region 21319	916 bp upstream
Tssr21320	transcription start site region 21320	955 bp upstream
Tssr21321	transcription start site region 21321	1047 bp upstream
Tssr21322	transcription start site region 21322	1192 bp upstream
Tssr21323	transcription start site region 21323	1239 bp upstream
Tssr21324	transcription start site region 21324	1271 bp upstream
Tssr21325	transcription start site region 21325	1311 bp upstream
Tssr21326	transcription start site region 21326	1333 bp upstream
Tssr21327	transcription start site region 21327	1382 bp upstream
Tssr21328	transcription start site region 21328	1420 bp upstream
Tssr21329	transcription start site region 21329	1433 bp upstream
Tssr21330	transcription start site region 21330	1455 bp upstream
Tssr27228	transcription start site region 27228	1548 bp downstream