rs52215417 SNP Detail

Summary

• ID
  rs52215417
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37692464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTTTTAA ACTAAAAATT
  TATAGTTTGT CTCAAGTCTC ATGACTGCAG GCAATTAAAA AGGTGAAGCT GACTTCATTA
  AATGTCTTCC AGATTCAAGG TTACTAAATC CTAACCTAGG AACGTGTGAT CTCAAGAAAC
  ACACAATGGA GGCATTTAAG CAGAATCAAT TTTGTGCAAT ATATTTGATT TTGAAATAGA
  M
  CATGACCTTT GAAGGTAATA TTTTTAACAT TTTATGGATT ATTATTACTA TTATTATTAT
  TAAAAATTTT TAAACTTAAG AGATTTGTTT TAGCACATCT CTGGTCCAAA TATTCTGAAA
  TGTAAATAGG AATCTTTGAA ATTATGTTTT TATAAGTGTT ATGTGGTTCA AACTCTCCAT
  TGTTGCCTCT CCTCATCTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134809906	ENSMUSSNP31308	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320711428	CHEV_3_37537237	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52215417					SNP	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37692464 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	1366 bp proximal
Gm42922	predicted gene 42922	1790 bp downstream
Rr575523	regulatory region 575523	1142 bp proximal
Rr575524	regulatory region 575524	1776 bp proximal
Spry1	sprouty RTK signaling antagonist 1	1632 bp upstream
Tssr28908	transcription start site region 28908	1349 bp upstream
Tssr28909	transcription start site region 28909	1590 bp upstream
Tssr28910	transcription start site region 28910	1613 bp upstream
Tssr28911	transcription start site region 28911	1630 bp upstream
Tssr28912	transcription start site region 28912	1670 bp upstream