rs52216368 SNP Detail

Summary

• ID
  rs52216368
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69936736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCATGCG TGCTCCTTGG
  TTGGCAACTC AGTGGACATG TACTTTAAAA AAGGGACTGC AGGACAAATC CTGTCCCTCC
  CCACTTTCTA ATCTTTCCCT TTTAGGTACT GTGTTAAAAT AGAACTTGTC CCCATCCTAC
  CATGTGAAGT TACAGCAAGA GGAGGACACC TTGGAAGCGG AGAAGAGACC TAACTTGACA
  Y
  TGAGTCACCC TCCCACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC
  ACACACACAC AGACTAAGAC AAGTCTCAAG ACTTTTTACT ACACTCTCTT AATTCTTTTT
  ATCCCACTAA CTACTTGTGT GACCTTCGGA AAAATCCCTT GGGTCCCAGT TTCTTCATCT
  TTACAATGAG AAGACACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144577436	ENSMUSSNP4700004	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss324407078	CHEV_13_69927495	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52216368					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69936736 () rs orientation: forward

Symbol	Name	Function Class
Gm60947	predicted gene, 60947	within coordinates
Rr273521	regulatory region 273521	1265 bp proximal