rs52217299 SNP Detail

Summary

• ID
  rs52217299
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:128060687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TACATATATA TATACATGTA ATATATACAT GTGTATGTAT
  ACATATATAT ATGTGTGTGT GTGTGTGTGT GTGTGTGTGT ATATATATAT ATATATATAT
  A
  TATATATATA TATATATAAA CAAACTTCAG GAAGTATGAC AATACCTGTA ATTTAAATCA
  ATCAAAAAAA TTAAAAACCA GACAACACTA TTTTAACCAA A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145891458	ENSMUSSNP1040487	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52217299					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128060687 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19791	CpG island 19791			1323 bp proximal
Rr656040	regulatory region 656040			884 bp proximal
Rr656041	regulatory region 656041			1499 bp proximal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1			Intron
				Noncoding-Transcript-Variant
Tssr75109	transcription start site region 75109			759 bp downstream