rs52217409 SNP Detail

Summary

• ID
  rs52217409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44151392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAA CACCAGTGTA GTCATGGTCC
  Y
  CTCTCTCTCT CTCTCTCTCT CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322199078	CHEV_7_51757338	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52217409					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44151392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18970	CpG island 18970	1518 bp distal
Garin5a	golgi associated RAB2 interactor 5A	482 bp downstream
Gm44646	predicted gene 44646	within coordinates
Mybpc2	myosin binding protein C, fast-type	within coordinates
Rr646111	regulatory region 646111	269 bp distal
Rr646112	regulatory region 646112	within coordinates
Rr646113	regulatory region 646113	39 bp distal