rs52217532 SNP Detail

Summary

• ID
  rs52217532
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:65510004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGCTAAC TAACTATAGT
  CATTTCTCTG GCCACCACTC CTCCTTTGAC TTAGGAAGAG AAGATGAGGG CTGGTGCCTT
  CAAGTTTCAA GGGTAGATAC AATCTAAGAA AGAAGAGAAT CGTCTACATA GATAAAATAC
  CACCTACTTC CTCTGTCAGA TTACTGTGTT TTTCTTCTTT ATTTCTGTGT ACATGTGTGT
  R
  TGTGTATCTC ACCTTGATTA TATATAATAT GTATATATAC ATACATACAT ATATACATAC
  ATACATATAT ACATATATAT ACATGTATAC ATACATACAT ATACACAGAG AGAGACAGAG
  ACAGAGTCAA AGAAAGACAC AGAGATACAC AGAGAGAAAG TGTATGTGTG TGTGTGTATG
  TGTGTGTGGG TGTGTGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147311773	ENSMUSSNP5978790	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325657140	CHEV_18_65536587	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52217532					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65510004 () rs orientation: forward

Symbol	Name	Function Class
Alpk2	alpha-kinase 2	within coordinates
Tssr151596	transcription start site region 151596	1223 bp downstream
Tssr153695	transcription start site region 153695	1517 bp upstream