rs52219260 SNP Detail

Summary

• ID
  rs52219260
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103134711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAAAGATT TTGTGATCAC AACTCAGTTC CTTCTGTGGC
  AAAAAAAAAA AAAAAAAAAA AAAAAAAAAG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  C
  ATGCAAAAGT TCATGGAAAA AACAAAACCC AAATGGTTGT TGTGCTGCTG ACTGGGGCAG
  GAGCCAGCCA GCTTCAATGC TCTCTTGTAC TTGTTGCTT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147131929	ENSMUSSNP1924053	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs52219260					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103134711 () rs orientation: forward

Symbol	Name	Function Class
Ehf	ets homologous factor	1091 bp upstream
Gm74896	predicted gene, 74896	32 bp downstream
Rr45517	regulatory region 45517	1489 bp proximal
Rr45518	regulatory region 45518	1889 bp proximal
Rr55313	regulatory region 55313	1110 bp distal
Tssr25460	transcription start site region 25460	1195 bp upstream
Tssr25461	transcription start site region 25461	1156 bp upstream