rs52219488 SNP Detail

Summary

• ID
  rs52219488
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:91398494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT GCTCCTTATC AAATGGTATT
  W
  AAAAAAATCT CAGTTGACTA TTTAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60293391	NES15791780	PERLEGEN	MM_PANEL2	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52219488					SNP	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60293391	NES15791780	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:91398494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9652	CpG island 9652	1867 bp distal
Cpgi9653	CpG island 9653	1563 bp proximal
Gm10308	predicted gene 10308	1675 bp downstream
Nrxn1	neurexin I	within coordinates
Rr334029	regulatory region 334029	1707 bp proximal
Rr340336	regulatory region 340336	within coordinates
Tssr149870	transcription start site region 149870	1649 bp downstream
Tssr149871	transcription start site region 149871	1757 bp downstream
Tssr149872	transcription start site region 149872	1794 bp downstream
Tssr149873	transcription start site region 149873	1918 bp downstream
Tssr149874	transcription start site region 149874	1952 bp downstream