rs52219530 SNP Detail

Summary

• ID
  rs52219530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:118340848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCTGCC TTGAAGAGCA
  GTACCCTTCA GGACGCTCTA CCCTGCAGAA CAGCGGGGCT CTCTAGTGAG TCAAGTCTGG
  CCTAAAGATA ACAACAGCTG TCTTCCTGTG CTTGTGGAAG GAGTCTGAGC TCTCTGAGAG
  AGTTTTCTCT CTTTTCAAAT GGAGTAACAG CAGTCCTTGG AAAAAATGCC TACCCTTAGG
  R
  AAAAAATTAG ATGATGATAA CAACAAAAGG AGAAAGAAAA GAAAACCAAA AAAATCCATC
  ACCAGCCCAG CCAGGACCGT CAGCATGCGC CCCTGTTTAG GAAGCACCCA TGCTTGTGCG
  TGTCTTCAAA GTCAGAAGCA GCTTCCTGTA GGAGAGCCAC AGGGCAGGCC TGGGCCGCTG
  AGCCTTGAAA CACTCTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52610951	NES15502339	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs52219530					SNP	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52610951	NES15502339	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:118340848 () rs orientation: forward

Symbol	Name	Function Class
Rr369642	regulatory region 369642	104 bp upstream
Rr387826	regulatory region 387826	1161 bp downstream
Rr474222	regulatory region 474222	within coordinates
Tssr115561	transcription start site region 115561	348 bp downstream