rs52219543 SNP Detail

Summary

• ID
  rs52219543
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117162096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTTGAGAG AATCTGATGA GAGAAGATTA
  CAACACCTTG TCCCTCCTGG GGTCCTGTTT CTTGCATGGC CAGCAGCCAT TGTTTTATCT
  TCACATGCCC TAAGCCTAGT GATTTAAGAA TCCAGTGTTT TGTAGGTGGA ACctctctct
  A
  tctctctctc tctctctctc tctctctctc tctctctctc tccttccctc tTtgtgtgta
  tgtgtgtgtg tgtgtgtgtg tgtgagagag agagagagag agagagagag agagCCGACA
  GGAGAGGAGT AAAGACCTAT GGCCCTCTAT                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324842594	CHEV_14_117323906	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52219543					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117162096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	485 bp proximal
Gpc6	glypican 6	631 bp upstream
Rr497535	regulatory region 497535	256 bp proximal
Rr497536	regulatory region 497536	1263 bp proximal
Rr497537	regulatory region 497537	1454 bp proximal
Tssr127141	transcription start site region 127141	521 bp upstream
Tssr127142	transcription start site region 127142	575 bp upstream
Tssr127143	transcription start site region 127143	607 bp upstream
Tssr127144	transcription start site region 127144	695 bp upstream
Tssr127145	transcription start site region 127145	821 bp upstream
Tssr127146	transcription start site region 127146	832 bp upstream
Tssr127147	transcription start site region 127147	861 bp upstream
Tssr127148	transcription start site region 127148	874 bp upstream
Tssr127149	transcription start site region 127149	1088 bp upstream
Tssr127150	transcription start site region 127150	1119 bp upstream