rs52219712 SNP Detail

Summary

• ID
  rs52219712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7354244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACATATATA TGAATGAACA CTTACATACA CATACACAGA
  CACACACACA GACACACACA CACACACACA CACACACACA CACACACATA AACACACACA
  Y
  GCTGGTCTGG AGTTAAGGCT TTGAAAAGCT CCTGTGTAGA CTTCCTTGAG GACATGGAGA
  ATTTCAGAAT GTCTCCACGT TTCTGTCTTG GAGCAGAAAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60680457	NES16229700	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52219712					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60680457	NES16229700	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7354244 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	698 bp downstream
Tssr83713	transcription start site region 83713	1858 bp downstream
Tssr83714	transcription start site region 83714	1674 bp downstream
Tssr83715	transcription start site region 83715	1630 bp downstream
Tssr83716	transcription start site region 83716	1337 bp downstream
Tssr83717	transcription start site region 83717	1326 bp downstream
Tssr83718	transcription start site region 83718	1292 bp downstream
Tssr83719	transcription start site region 83719	1259 bp downstream
Tssr83720	transcription start site region 83720	1226 bp downstream
Tssr83721	transcription start site region 83721	995 bp downstream
Tssr83722	transcription start site region 83722	714 bp downstream
Tssr83723	transcription start site region 83723	667 bp downstream
Tssr83724	transcription start site region 83724	348 bp downstream
Tssr83725	transcription start site region 83725	211 bp downstream
Tssr83726	transcription start site region 83726	116 bp downstream
Tssr83727	transcription start site region 83727	466 bp upstream
Tssr83728	transcription start site region 83728	558 bp upstream
Tssr83729	transcription start site region 83729	580 bp upstream
Tssr83730	transcription start site region 83730	1060 bp upstream
Tssr83731	transcription start site region 83731	1074 bp upstream
Tssr83732	transcription start site region 83732	1115 bp upstream
Tssr83733	transcription start site region 83733	1152 bp upstream
Tssr83734	transcription start site region 83734	1580 bp upstream
Tssr83735	transcription start site region 83735	1602 bp upstream
Tssr88067	transcription start site region 88067	1231 bp upstream
Tssr88068	transcription start site region 88068	1185 bp upstream
Tssr88069	transcription start site region 88069	739 bp upstream
Tssr88070	transcription start site region 88070	507 bp downstream
Tssr88071	transcription start site region 88071	1171 bp downstream