rs52221110 SNP Detail

Summary

• ID
  rs52221110
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38937289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTACTTTG TCTGGTTTCT GGGGATGGAA CTGAAGTGGT
  CAAGTATCCC TGGCAAAAGC CTTTATTTTC ACCCAGAGAA AGAATTACGT ATATGGTAAT
  G
  TAGTAAATCT ATTATCTATT ATATTATATT ACATTATATA TTATGTTATA TATTATATAA
  TATGCTAATA TTAGATAATA ACATAAATAA TATATATGG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss134846097	ENSMUSSNP5970964	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320724076	CHEV_3_38782062	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs52221110					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38937289 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	1842 bp proximal
Gm65329	predicted gene, 65329	1526 bp downstream
Rr575715	regulatory region 575715	within coordinates
Rr575716	regulatory region 575716	115 bp distal
Rr575717	regulatory region 575717	470 bp proximal
Rr575718	regulatory region 575718	1333 bp proximal