rs52222951 SNP Detail

Summary

• ID
  rs52222951
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154933511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACTTTTGG GATAGCATTG GAAATGTAAT TGAAGAAAAT
  ACGTAATAAA AAAAAAAGAA AAAAAAGAAT AGAGAGGTGG GAAAAGAGGA GAAACGGAGC
  R
  CAGTATCGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGTATCTC
  CAGAGAGGAC TCTGACCCTG GGCAGACTGA CAGTAAAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145774482	ENSMUSSNP3475489	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52222951					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154933511 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	1897 bp proximal
Gm29282	predicted gene 29282	586 bp upstream
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	1232 bp downstream
Rr372279	regulatory region 372279	468 bp downstream
Rr396410	regulatory region 396410	1793 bp upstream
Tssr248	transcription start site region 248	1758 bp downstream
Tssr9521	transcription start site region 9521	1921 bp upstream
Tssr14331	transcription start site region 14331	1769 bp downstream
Tssr14332	transcription start site region 14332	1783 bp downstream
Tssr14333	transcription start site region 14333	1793 bp downstream