rs52223649 SNP Detail

Summary

• ID
  rs52223649
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121303614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGCATGGAA GCAAAGCATT CATACACTTA AAAATAAACA
  AACAAAACAA TTACAGTGAA AAGAAACACA CAACATAGGC CTCTAGCTCA CTTTCTTCTT
  C
  TTTTTTTTAA AGATTTTATT TATTTATTAT ATGTAAGTAC ACTGTAGCCG TCTTCAGACA
  CTCCAGAAGA GGGCATTAGA TTTCGTTATG GATGGTTGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147387202	ENSMUSSNP2158595	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52223649					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121303614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12161	CpG island 12161	820 bp proximal
Gm75774	predicted gene, 75774	956 bp upstream
Mfap1b	microfibrillar-associated protein 1B	Intron
Rr563831	regulatory region 563831	48 bp distal
Rr563832	regulatory region 563832	59 bp proximal
Rr563833	regulatory region 563833	924 bp proximal
Rr563834	regulatory region 563834	967 bp proximal
Tssr25938	transcription start site region 25938	860 bp downstream
Tssr25939	transcription start site region 25939	908 bp downstream