rs52224247 SNP Detail

Summary

• ID
  rs52224247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91177239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGACTCCT CTGCCTCACA
  TCTTCCCGAG TTTGGAAACA GGTCCTCATG CTGACAAACG CTTTACTCCC TGAACCCAAG
  TGCCTCATTT CAAAAGAAAT CTTAGGGTCT AGGGTGTGGG GGGAGGGGGG AGACGGGGGG
  GGGGGGGAGG CGGGGGGAGG GGGCGGGTAG CTCAAAGGTA GTGCTTTGCA TGTGAGACCT
  Y
  CTGAGATTCA TTCCCCAGAA TTGCTAAGAA AATCACTGGA AACCTGACGC TCCTTGTTCT
  TTTCCACAGA AAATATCCTC TTTCCAAGGC CCTACCTCTC TAGGAGTCTT GCCGAATTCT
  CTCCCAAAGT AGGCTATCTC CAGTCCCACA GGGACTGAGA ATGCATACCA CACGAGCTGC
  AAGTAGGATG CTGCACATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60767813	NES16403370	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52224247					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60767813	NES16403370	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91177239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	379 bp proximal
Rr366958	regulatory region 366958	428 bp upstream
Rr415585	regulatory region 415585	1576 bp distal
Rr415586	regulatory region 415586	181 bp distal
Rr415587	regulatory region 415587	304 bp proximal
Rr415588	regulatory region 415588	1060 bp proximal
Tssr8065	transcription start site region 8065	676 bp upstream
Tssr8066	transcription start site region 8066	780 bp upstream
Tssr8067	transcription start site region 8067	794 bp upstream
Tssr8068	transcription start site region 8068	965 bp upstream
Tssr8069	transcription start site region 8069	1058 bp upstream
Tssr12938	transcription start site region 12938	523 bp downstream
Tssr12939	transcription start site region 12939	1855 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	173 bp upstream