rs52224650 SNP Detail

Summary

• ID
  rs52224650
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:40084094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA GTTGGGGAGA AAGGAAAGAG
  A
  GAGGAGAGAC AGGCATAAAC CTAGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144620815	ENSMUSSNP1867609	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322624652	CHEV_8_40716407	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52224650					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40084094 () rs orientation: forward

Symbol	Name	Function Class
Msr1	macrophage scavenger receptor 1	within coordinates
Tssr81026	transcription start site region 81026	1796 bp upstream
Tssr81027	transcription start site region 81027	1698 bp upstream
Tssr81028	transcription start site region 81028	1644 bp upstream
Tssr81029	transcription start site region 81029	1520 bp upstream
Tssr81030	transcription start site region 81030	1403 bp upstream
Tssr81031	transcription start site region 81031	707 bp upstream
Tssr81032	transcription start site region 81032	144 bp downstream
Tssr81033	transcription start site region 81033	254 bp downstream
Tssr81034	transcription start site region 81034	279 bp downstream