rs52224886 SNP Detail

Summary

• ID
  rs52224886
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34574177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCAGGAAG CTGAGACACC ACAGCTTGAA ACACACATGC
  ATGTGCAAGC AAGAACAAAC ATACACACAC ATACACATGC ACTCACAAGT GCGAGTGTGC
  T
  TGAGCATCTT TCTAAACAGC ACCATCAACT GGGGTCTAAG TACTCAAACA CATGAGCCTA
  TAGGAGACTG TGTCATTCAC ACCACCAAAA AATAATATG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149092909	ENSMUSSNP660145	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322575043	CHEV_8_35170077	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52224886					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34574177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	1092 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	1323 bp upstream
Tssr80889	transcription start site region 80889	739 bp downstream
Tssr80890	transcription start site region 80890	793 bp downstream
Tssr80891	transcription start site region 80891	1420 bp downstream
Tssr80892	transcription start site region 80892	1488 bp downstream
Tssr80893	transcription start site region 80893	1769 bp downstream