rs52224902 SNP Detail

Summary

• ID
  rs52224902
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:88822233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAACCCT GGGAGTAAGA
  GTACTTTCAT TAAAAGCCAT ACAATGACAA ATTATACCGC TTAATTGAAA ATCACCCCAT
  ACACAAAACA CAACCTCAAA CCATCATCTC AAAGCACTGA TTATCTGGAA CAAGGCAAGA
  TACAGAACAA GATGCCTTAA GTGTTATAAT AAAAATACAA AATCCTGTAA ATTAAAAAAA
  W
  AGAAAACTAC AGGGGAAAAA AAGAATAAAG ATGGGAGATA TAAAAGATAG GACATTACAA
  TTTGGGAGGG GAGGGGAAGT GTTAGCATGT GAAAAACAGC AAACACATTT GCCCAAACTG
  GACAGTAAAA TGAAGAGCCA AAGGCAAAAG GCACAGCAGC TGGCTATTTT GTGTTGGGCT
  CTATGAAGGG ATACTTCACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss148793234	ENSMUSSNP2624712	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs52224902					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88822233 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16030	CpG island 16030			518 bp proximal
Gm71600	predicted gene, 71600			1849 bp upstream
Grsf1	G-rich RNA sequence binding factor 1			Intron
				Noncoding-Transcript-Variant
Rr614150	regulatory region 614150			375 bp proximal
Rr614151	regulatory region 614151			1282 bp proximal
Rr614152	regulatory region 614152			1583 bp proximal
Rr614153	regulatory region 614153			1644 bp proximal
Rr614154	regulatory region 614154			1787 bp proximal
Rr614155	regulatory region 614155			1860 bp proximal
Tssr51689	transcription start site region 51689			816 bp downstream
Tssr51690	transcription start site region 51690			1168 bp downstream
Tssr51691	transcription start site region 51691			1191 bp downstream
Tssr51692	transcription start site region 51692			1239 bp downstream
Tssr51693	transcription start site region 51693			1737 bp downstream
Tssr51694	transcription start site region 51694			1761 bp downstream
Tssr51695	transcription start site region 51695			1818 bp downstream
Tssr51696	transcription start site region 51696			1852 bp downstream