rs52225452 SNP Detail

Summary

• ID
  rs52225452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110952348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCTTGT CTGGAGAGAA
  GGGGGCTCAG CCAGGGACAT GGGCACCTCT TTTTGTGGTG ATAGGACATG GATGTCCGGG
  AGAGCACAGG TACAGGTGAT GGTGTTTGCA CCCACTCTGA TACACTTCGC ACATCACAGT
  AGGTGCGCTG TGACATCGTC GTCGATGCAC ATGATACATA TCAGTCACAT TTGCCCCAAG
  Y
  CCTTCCTTGG TCCCTTCTAG TCCCAGCCAT CCCCCTTCCC ACCTCTCCCC CTTCTACTTA
  ATTGTTTTTC CTTTGATTTT TACTTATAGA TGGGTGTTTG CTGGGAATCA AACCTGAGTC
  CTCTGGAACA GCACACAGGC AGGAAGTGCT CTTAATGGCC AAGTCCTCTC TCCAGCCCCC
  ACACCGTGTG TGTGTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61718114	NES17662551	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52225452					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61718114	NES17662551	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110952348 () rs orientation: forward

Symbol	Name	Function Class
Gm48630	predicted gene, 48630	within coordinates
Gm51959	predicted gene, 51959	within coordinates
Gm60603	predicted gene, 60603	within coordinates
Tssr3954	transcription start site region 3954	497 bp downstream
Tssr117807	transcription start site region 117807	1190 bp downstream
Tssr117808	transcription start site region 117808	1216 bp downstream