rs52225664 SNP Detail

Summary

• ID
  rs52225664
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:48532331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTATCCGTG GCTTTTGTCA CTTTGGCTAT GTGAGCTCAG
  AAGATGGCGG AGTGTTGTTT AAAACATCCT CCACTGTTGT GCCAGGGAAA AGTTAGTGAC
  M
  CCCCCCCCCC CCCCGCCAAA CACACACACA CACACACACA CACACAGGAG CTGATCTGAT
  GCAACTCACA GCAGGGTCTT TATTCTATTC GAGCTAGCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133164141	ENSMUSSNP5995967	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52225664					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48532331 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm67220	predicted gene, 67220			within coordinates
Gm67227	predicted gene, 67227			624 bp upstream
Lrrc61	leucine rich repeat containing 61			Intron
				Noncoding-Transcript-Variant
Rr399635	regulatory region 399635			579 bp downstream
Rr629687	regulatory region 629687			635 bp distal
Rr629688	regulatory region 629688			582 bp distal
Rr629689	regulatory region 629689			within coordinates
Tssr56137	transcription start site region 56137			552 bp downstream
Tssr56138	transcription start site region 56138			435 bp downstream
Tssr60734	transcription start site region 60734			731 bp upstream
Tssr60735	transcription start site region 60735			710 bp upstream
Tssr60736	transcription start site region 60736			666 bp upstream