rs52225708 SNP Detail

Summary

• ID
  rs52225708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8857546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTAACTCA AGTCCAACTG
  TAGACTTGAG CAAAATGTTG GAGAGAAAGT TGGGTGGTTA AAAGTTATGC TGCTCTTGCA
  GATGACCTGA GTTTGGTTCC CAGCACCCAC ATCAGGTAAC TCACAACCAT AATAACTTCA
  GCTCCAGGGG ATCCTCTTCT GGACTGCACA GACCAACACA CATACATGTC CACATATCCA
  Y
  ATATACATAA CCACATAGTC ACATAACTAA AAAATAAAAA TATTTTAAAA AATTGTGTCT
  AGAGATACGT CCTAATACAA ATGACCAATG TCTTGCTAAC AAGGGTGTCA AGACAATTAA
  AGCAGGAAAG AAAGGATATT GCAACGCGAT GATGCCACAA ATCGGATATC CACATGTGTA
  TAAACACAAA TATACCTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146769141	ENSMUSSNP2260930	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss323246150	CHEV_10_8701600	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52225708					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8857546 () rs orientation: forward

Symbol	Name	Function Class
Rr223851	regulatory region 223851	1055 bp proximal
Rr223852	regulatory region 223852	1532 bp proximal