rs52226666 SNP Detail

Summary

• ID
  rs52226666
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96181451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCCCGGCTCC ATGCCCAGAA CACACACACA CACACACACA
  CACACACACA CACACACACA CACACACTCA CAAGTAAACA CATGTTCACA GTCACTCACA
  S
  ACACCAATGT ACACTCACAC ATTGGATAAT AAACAGAGAG TCACATTTGC CCCTAAGTAA
  ATACATCCAT GAGACCATAT GTTCCGTCAC ACAGGCCCAA A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132676606	ENSMUSSNP6583684	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52226666					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96181451 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3638	CpG island 3638	1003 bp distal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	412 bp downstream
Hoxb7	homeobox B7	463 bp downstream
Rr386515	regulatory region 386515	152 bp upstream
Rr455356	regulatory region 455356	1361 bp proximal
Rr455357	regulatory region 455357	1862 bp proximal
Tssr104478	transcription start site region 104478	1528 bp upstream
Tssr104479	transcription start site region 104479	1828 bp upstream
Tssr110325	transcription start site region 110325	1097 bp upstream