rs52227073 SNP Detail

Summary

• ID
  rs52227073
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36899769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TTGCCAGTGA TTACTGATAA
  T
  ATAATAATAA AAACAAAAAC AAAAA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146951395	ENSMUSSNP126380	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52227073					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36899769 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9876	CpG island 9876	1139 bp distal
Dnd1	DND microRNA-mediated repression inhibitor 1	502 bp upstream
Hars1	histidyl-tRNA synthetase 1	within coordinates
Rr352751	regulatory region 352751	1168 bp distal
Tssr152972	transcription start site region 152972	511 bp upstream
Tssr152973	transcription start site region 152973	479 bp upstream