rs52227249 SNP Detail

Summary

• ID
  rs52227249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:77727298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTGAGTGG GTAGGGGAGC AGGGCAGGGG GGCGGGGTGG
  GGAGGGTATA GGGGACTTTT GGGCTAGCAT TTTAAATGTA AATGAAGAAA ATATCTAATA
  R
  AGATTGAAAA AGAAAAAAAA TGTCTAAGGG TGAGGGCATT CTCATGCTTC AGTTACACAA
  ATCAGAATGT GCTCTACTTT TTTTTTTTTT TTTTTTTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322274904	CHEV_7_85222436	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52227249					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:77727298 () rs orientation: forward

Symbol	Name	Function Class
Gm53379	predicted gene, 53379	within coordinates
Tssr67298	transcription start site region 67298	67 bp upstream