rs52227446 SNP Detail

Summary

• ID
  rs52227446
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149152059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCAGAA TGCCCAACCA
  GTCACACGAT TAGGCTTCTC TATGGAAAAT CGGTAAAACC AGCTGTTGAA CCAAACTGGT
  CACAGTTATG AGGAAGCTGG TGTTGACATG ATATGAGCCA AGTGACACAG GTTAGGTATC
  TTTCAGTGCT AATCTCTCAG CATAAACACA CAAGCATTTA CAGAGGGCAA GAGAGATCTC
  S
  CAGCATCTGC CCTGTTGCTG CTGTTGCTGA TGCTGTTGCT GATACTGTTG CTGCTGCTGC
  TGCTCTGTCT CTCCTGTCAG GAAAGATACT CTGTGACTGA CGAGATGGAC ACATGTGATA
  CTTTAAAAGA AACTGTCAAG GAAATGATAA GGAATTTCCA TGAGACTGTA GAAGATTAGG
  GATTTTGAAA GTGGGCAGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136071464	ENSMUSSNP5990981	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
ss321019010	CHEV_3_149109386	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52227446					SNP	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149152059 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	921 bp upstream
Rr398127	regulatory region 398127	598 bp downstream
Rr587324	regulatory region 587324	1321 bp distal
Rr587325	regulatory region 587325	787 bp distal
Tssr36100	transcription start site region 36100	1178 bp upstream
Tssr36101	transcription start site region 36101	1157 bp upstream
Tssr36102	transcription start site region 36102	1144 bp upstream
Tssr36103	transcription start site region 36103	1053 bp upstream
Tssr36104	transcription start site region 36104	1005 bp upstream
Tssr36105	transcription start site region 36105	927 bp upstream