rs52228145 SNP Detail

Summary

• ID
  rs52228145
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:104893702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATATGTA TCAGAAGATG
  GCCTAGCCAG CCATCAGTGG AAAGAGAGGC CCATTGGTCT TGCAAACTTT ATATGCCTCA
  GTACAGGGGA ACAGGGAACG CCAGGGCCAA GAAGTGGGAG TGGGTGGGAA GGGGAGTTGG
  GGGGAGGGTA TGGGGGACTT TTGGGATAGC ATTGGAAATG TAAATGAAGA AAATACCTAA
  A
  TAAAATAAAA TAAAGTTCTT CTCACTTAGC CAGCAAGATC CTCCCTGGTC TTCCACTCAT
  TTAGGCTAAG GAGGAAGGGC TGAGGCAAAG TCTTCCAACC TTTCCAAAAA CCAGGAGGTT
  TTGTGTCTCC TATTTATCAC CAGTAGTGCT TTCTCTAACA GATGCTAGAT GTGAGGTACA
  ACAGAGCCTG GCTTGACACA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136905023	ENSMUSSNP5434699	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs52228145					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:104893702 () rs orientation: forward

Symbol	Name	Function Class
Cpne4	copine IV	within coordinates
Tssr86830	transcription start site region 86830	1865 bp upstream
Tssr86831	transcription start site region 86831	1897 bp upstream