rs52229408 SNP Detail

Summary

• ID
  rs52229408
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54570424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGTAAGGTTA AAAAATATAT ATAATATTAT ATACATATAT
  GTATATATAT AAATATGTAT ATGTGTATGT GTATATATAT ATATATATAT ATGTGTGTGT
  S
  TGTGTGTGTG TGTGTGTGTC TGTGTGTCTG TGTGTCTGTG TGTCTGTGTG TGTATCCTGA
  CATCTGCCAG AGGAGGGAGA TGGAAAGTCA AGTGTAAGTT A                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136506938	ENSMUSSNP320709	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52229408					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54570424 () rs orientation: forward

Symbol	Name	Function Class
Acsbg1	acyl-CoA synthetase bubblegum family member 1	1270 bp upstream
Gm39341	predicted gene, 39341	1208 bp downstream
Rr204171	regulatory region 204171	1167 bp proximal
Rr206444	regulatory region 206444	1223 bp distal
Tssr89653	transcription start site region 89653	1424 bp upstream
Tssr89654	transcription start site region 89654	1285 bp upstream
Tssr89655	transcription start site region 89655	1228 bp upstream