rs52230356 SNP Detail

Summary

• ID
  rs52230356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55515695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTTACCA TCTTCTATAT
  CCAGCCAGGG CACCCGTCCT TAGGCTATTA AGCCTGATGG TCTCTGCATT TTATCCCTGG
  GACCCAGGTA GTGAGAGGAG AGAACCAAGT CCTAAAAGTT ATCCTCTGGC CTCTGGGCCA
  CAGCATGATC ATGTGCCTAC ATACAGTAAG CTAATTAGGG AACAAACTCT TTCTTTTGTT
  Y
  GTTCGCTCTT TCCTTCTCCC CCCCCTCTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT
  CTTTCTTTCT TTCTTTCTTT CTTTCAGATT TACTTATTTT ATGCATATGA GTGCATCACC
  ATTGTTGTCT TCAGACACAC CAGAAGAGGG CATCAGACAC CATTACTGAT GGTTGTGAGC
  CACCATGTGG TTGCTAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61806375	NES17743900	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52230356					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806375	NES17743900	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55515695 () rs orientation: forward

Symbol	Name	Function Class
Rgs14	regulator of G-protein signaling 14	1850 bp upstream
Rr369713	regulatory region 369713	1603 bp upstream
Rr480442	regulatory region 480442	136 bp proximal
Rr480443	regulatory region 480443	702 bp proximal
Rr480444	regulatory region 480444	922 bp proximal
Rr480445	regulatory region 480445	1369 bp proximal
Rr480446	regulatory region 480446	1861 bp proximal
Tssr119942	transcription start site region 119942	1854 bp upstream
Tssr119943	transcription start site region 119943	1885 bp upstream
Tssr119944	transcription start site region 119944	1899 bp upstream