rs52231533 SNP Detail

Summary

• ID
  rs52231533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48656165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT GGTGCTCCTC CGTGCTCCCC
  R
  CATTCCTGGG GCTCCTTGCA TCCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145714988	ENSMUSSNP2984115	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325408129	CHEV_17_48488462	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52231533					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48656165 () rs orientation: forward

Symbol	Name	Function Class
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145097	transcription start site region 145097	1606 bp downstream
Tssr145098	transcription start site region 145098	1264 bp downstream
Tssr145099	transcription start site region 145099	638 bp downstream
Tssr145100	transcription start site region 145100	612 bp downstream
Tssr145101	transcription start site region 145101	571 bp downstream
Tssr145102	transcription start site region 145102	457 bp downstream
Tssr145103	transcription start site region 145103	1999 bp upstream
Tssr148525	transcription start site region 148525	401 bp upstream