rs52231882 SNP Detail

Summary

• ID
  rs52231882
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21424600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGGGGGC ATGTTAGCTA
  AACTAGTCTG TACAACCGAG GTATAAACAC TTTCACTAGG TACACATTCA AGGAATACCT
  AACCAAAAAA GAAAGTCACC CCCACAAATT AGATGCCAGC TTTTTTTTGT TTTGTTTTGT
  TTTGTTTTGT TTTGTTTTGT TTTTTTCGAG ACAGGGTTTC TCTGTATAAC CCTGGCTGTC
  Y
  TGGAACTCAC TCTGTAGGCC AGGCTGGCCT TGAACTCAGA AATCCGCCTG CCTCTGCCTC
  CCGAGTGCTG GGATTAAAGG CGTGCGCCAC CACCGCCCGG TAGATGCCAG CTTTTTAATA
  ATAGAAATGC TATGATATTT CTCTTGAGTG TCCAGGCTCC ATGTCCCCAG GTTTGTAACT
  TTAGTTGACT GCAGATTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137298211	ENSMUSSNP4825810	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52231882					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21424600 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	967 bp upstream
Cpgi4477	CpG island 4477	392 bp distal
Gm49586	predicted gene, 49586	253 bp downstream
Rr463712	regulatory region 463712	1160 bp distal
Rr463713	regulatory region 463713	916 bp distal
Rr463714	regulatory region 463714	1035 bp distal
Rr463715	regulatory region 463715	within coordinates
Rr463716	regulatory region 463716	855 bp distal
Rr463717	regulatory region 463717	367 bp distal
Tssr112932	transcription start site region 112932	820 bp downstream
Tssr112933	transcription start site region 112933	342 bp downstream
Tssr115856	transcription start site region 115856	1107 bp upstream
Tssr115857	transcription start site region 115857	1081 bp upstream
Tssr115858	transcription start site region 115858	1053 bp upstream
Tssr115859	transcription start site region 115859	1007 bp upstream
Tssr115860	transcription start site region 115860	982 bp upstream