rs52232269 SNP Detail

Summary

• ID
  rs52232269
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91457699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA ATGTTCACTG GGCAAGTGTG
  W
  ACATCTGAGT GGGAACCCCC AGAAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144946896	ENSMUSSNP3767797	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss319840931	CHEV_1_93426554	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52232269					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91457699 () rs orientation: forward

Symbol	Name	Function Class
Rr35283	regulatory region 35283	within coordinates
Traf3ip1	TRAF3 interacting protein 1	670 bp downstream
Tssr8094	transcription start site region 8094	1941 bp downstream