rs52232362 SNP Detail

Summary

• ID
  rs52232362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156135586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGGGGGAA GCTGTTCCTG AGTTCACAAC
  GCCATCTGAA TCTGGGGCAT AGCCCCACAT CTTCCATCCT CCCATGAACt atatatatat
  atatatatat atatatatat atatgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
  R
  tatgtatatg AAAtttttaa aagatttatc ttatatatgt gagtgtactg tagctatctt
  cagacacacc agatgaggat atcaaatcct gttacagatg gttttgagcc gccatgtagt
  tgctgggaat tgaactcagg acctctggaa                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss148125053	ENSMUSSNP4478178	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321444923	CHEV_4_155425238	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs52232362					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156135586 () rs orientation: forward

Symbol	Name	Function Class
Gm13648	predicted gene 13648	1586 bp downstream
Rr93557	regulatory region 93557	185 bp distal
Rr97568	regulatory region 97568	628 bp proximal
Rr106662	regulatory region 106662	866 bp distal
Tssr45000	transcription start site region 45000	656 bp upstream
Tssr45001	transcription start site region 45001	623 bp upstream
Tssr45002	transcription start site region 45002	368 bp upstream
Tssr45003	transcription start site region 45003	357 bp upstream
Tssr45004	transcription start site region 45004	333 bp upstream
Ttll10	tubulin tyrosine ligase-like family, member 10	312 bp upstream