rs52233292 SNP Detail

Summary

• ID
  rs52233292
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79991358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT GGGAAATGTG AGGCCTTTGG
  Y
  TCTAAACTGC CTATGATTTC CTAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145142262	ENSMUSSNP4559913	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss322281154	CHEV_7_87486496	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52233292					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79991358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19331	CpG island 19331	1112 bp distal
Cpgi19332	CpG island 19332	1273 bp proximal
Hddc3	HD domain containing 3	1494 bp upstream
Rr400403	regulatory region 400403	1209 bp downstream
Rr400404	regulatory region 400404	1333 bp upstream
Rr649870	regulatory region 649870	901 bp distal
Rr649871	regulatory region 649871	1242 bp distal
Rr649872	regulatory region 649872	573 bp distal
Rr649873	regulatory region 649873	1013 bp proximal
Rr649874	regulatory region 649874	1457 bp proximal
Tssr67435	transcription start site region 67435	1481 bp upstream
Tssr67436	transcription start site region 67436	1555 bp upstream
Tssr73215	transcription start site region 73215	1600 bp upstream
Tssr73216	transcription start site region 73216	1460 bp upstream
Tssr73217	transcription start site region 73217	1400 bp upstream
Tssr73218	transcription start site region 73218	1379 bp upstream
Unc45a	unc-45 myosin chaperone A	610 bp upstream