rs52233900 SNP Detail

Summary

• ID
  rs52233900
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41360192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG AGGAGAGAAA AGGGAGAAGA
  A
  GGAAGGGGCA CAGGAGGTAC GTTAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325809429	CHEV_19_41446243	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52233900					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41360192 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr547619	regulatory region 547619	1255 bp distal
Rr547620	regulatory region 547620	69 bp distal
Rr547621	regulatory region 547621	487 bp proximal
Tssr159304	transcription start site region 159304	1521 bp upstream
Tssr159305	transcription start site region 159305	1494 bp upstream
Tssr159306	transcription start site region 159306	154 bp downstream