rs52234615 SNP Detail

Summary

• ID
  rs52234615
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:9850321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAAGGT AGACTTTACC
  TACTATATTC AGTGGAGGAT TAGCTTTCTT TGGGGGGGGG GGTATTTAAA CAATTTTTAT
  TATATATTTT CTTCATTTAC AATTCAAATG CTATCCCTAA AGTCCCCTAT ACCCTCCCCC
  TGCCCTGCTC CCCAACCCAC CCACTCCTGC TTCCTGGACC TGGCATTCCC CTGTACTGGG
  A
  CATATAAAGT TTGCGAGACC AAGGGCCTCT CTTCCATCTT CTACTACATA CATATGCAGC
  TAGAGACACG AGCTCTAGGG GTACTGGTTA GTTCATGTTG TTGTTCCTCC TATAGAGTTG
  CAGACCCCTT CAGCTCCTTG GGTACTCTCT CTAGCTCCTC CATTGAGGGC CCCGAGTTCC
  ATCCAATAGA TGACTGTGAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146600590	ENSMUSSNP5683193	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52234615					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:9850321 () rs orientation: forward

Symbol	Name	Function Class
Colec12	collectin sub-family member 12	within coordinates
Rr352540	regulatory region 352540	1519 bp distal
Tssr150016	transcription start site region 150016	1581 bp downstream