rs52234747 SNP Detail

Summary

• ID
  rs52234747
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128532022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTAACACA CACACACAGC ACTTTCCCCC CAATCCCCAC
  ATTCTATACC CCAACACACA CACACACACA CACACACACA CACACACACA CATACACACA
  A
  ACACACACCC CTCACTTATC ACCATGACTT ACCCTCTTCA CTGGCTCCTC TTCCTGCTCT
  GATTTCTCTT CTCTTTCATT TTTGAGGCTT CTTTAGTGT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145462624	ENSMUSSNP515673	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52234747					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128532022 () rs orientation: forward

Symbol	Name	Function Class
Rr366987	regulatory region 366987	1591 bp upstream
Rr396265	regulatory region 396265	1728 bp upstream
Rr417789	regulatory region 417789	945 bp distal
Rr417790	regulatory region 417790	1504 bp proximal