rs52235181 SNP Detail

Summary

• ID
  rs52235181
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT TTGTTTAATG TATGTAAGTA
  C
  ACTGTTGCTA TCTTCAGACA CACCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148469540	ENSMUSSNP6348338	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322116602	CHEV_7_19759911	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52235181					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908487 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1368 bp distal
Cpgi18450	CpG island 18450	1732 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1859 bp upstream
Gm71808	predicted gene, 71808	1537 bp downstream
Rr155270	regulatory region 155270	1087 bp distal
Rr155271	regulatory region 155271	within coordinates
Rr167137	regulatory region 167137	1286 bp distal
Rr167138	regulatory region 167138	913 bp proximal
Tssr64790	transcription start site region 64790	1854 bp upstream
Tssr64791	transcription start site region 64791	1884 bp upstream
Tssr64792	transcription start site region 64792	1921 bp upstream
Tssr64793	transcription start site region 64793	1951 bp upstream