rs52235409 SNP Detail

Summary

• ID
  rs52235409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77542348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAAGGG AAGAGGGAAA
  CGAAGAAATG GGGAGGGAGG ACAGGAGCCC TTTCTACATC ATACCTGTCT TACAGCTTCT
  CTAACTTCCA CTCCTCTGTT GGATCTTACC AAGGTGCCAT TTTGTCATTA GAACACAGTT
  GTTTCCAGTT TTTCTTATTT TTCTCATCGG TTTTCTGTTG ATTACTCATT TGAGCTTATT
  Y
  TTAACATATT AGGTTACATA CATTTTTTAT TATTAGATAT TCTCTTTATT TACATTTTAA
  ATTTTATCTC CTTTCCTCAT TTCCCCTTCT AACACCCTAT CCCATCCCCT CTTCCCCTGC
  TCCCCAGCCC ACCCACTCCT GCTTCCTGGC CCTGGCATTC TCCTACACTG GGGCATCGAG
  CCTTCACAAG ACCAAGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61429418	NES16808734	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52235409					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61429418	NES16808734	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77542348 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	within coordinates
Klhl31	kelch-like 31	1666 bp upstream
Rr683389	regulatory region 683389	944 bp proximal
Rr683390	regulatory region 683390	1445 bp proximal
Rr683391	regulatory region 683391	1751 bp proximal
Tssr86194	transcription start site region 86194	1403 bp upstream
Tssr86195	transcription start site region 86195	1428 bp upstream
Tssr86196	transcription start site region 86196	1470 bp upstream
Tssr86197	transcription start site region 86197	1509 bp upstream
Tssr86198	transcription start site region 86198	1553 bp upstream
Tssr86199	transcription start site region 86199	1555 bp upstream
Tssr86200	transcription start site region 86200	1570 bp upstream
Tssr86201	transcription start site region 86201	1647 bp upstream