rs52235458 SNP Detail

Summary

• ID
  rs52235458
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24005999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTA TATATGGTAT AATATAATTG
  C
  ATATTATATA TAATCTTCAC GTATA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145332724	ENSMUSSNP6862426	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325327347	CHEV_17_23923992	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52235458					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24005999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8693	CpG island 8693	705 bp distal
Flywch2	FLYWCH family member 2	944 bp upstream
Tssr146663	transcription start site region 146663	942 bp upstream
Tssr146664	transcription start site region 146664	903 bp upstream
Tssr146665	transcription start site region 146665	788 bp upstream