rs52235644 SNP Detail

Summary

• ID
  rs52235644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16677713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACAAATCAT
  AAATAAAACA AAAATTTCAA AATAAAAAAT TTGGAATATC TGGGTACAGT GGCTCACACC
  TATGATCCCA GCATTCTGAG GCAGGAGGAT TACCAGGACT TTGAGGCTAG CCTGGGCTAC
  ATAGTGATAT CCTGTTTCAA AAACCAAACC CCAAAAGGAT CCAGGTGTGC TAGCATACAA
  Y
  GTCAATCCAG CATTCAGCAA GCAAAGGCAG AAGGCAGAGG GCAGAGGGCA GAGGCAGAGG
  CTGACAGATC TCTATGAGTT TGTGGCTAAC CTGAGCTACA CAGTTCTAGG CTAAACTGGC
  CTACAAAGTG AGATCCCGTT TCAGAAGCAG AATATAGGGA CATCCATGAG TGAAGCTGGT
  CTCCATGAGT CTGGTACCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148399944	ENSMUSSNP3709060	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52235644					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16677713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18406	CpG island 18406	666 bp proximal
Gm71929	predicted gene, 71929	1504 bp downstream
Pnma8b	PNMA family member 8B	894 bp upstream
Rr368243	regulatory region 368243	668 bp upstream
Rr642821	regulatory region 642821	419 bp distal
Rr642822	regulatory region 642822	404 bp proximal
Rr642823	regulatory region 642823	817 bp proximal
Rr642824	regulatory region 642824	1855 bp proximal
Tssr64660	transcription start site region 64660	857 bp upstream
Tssr64661	transcription start site region 64661	1906 bp upstream
Tssr70792	transcription start site region 70792	1861 bp downstream