rs52237556 SNP Detail

Summary

• ID
  rs52237556
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117695225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAAGCAGG GGCAAGCAGA TCTCCTGGGT TGAGCTAGCC
  CTCAAGCAGT CAAGGCTACA CAAAGAAACC CTGTCTCGAA AAAGAATTAA AAGTTTAAAA
  M
  AATAAAAACA ACAACAAAAA AAAAAACTTA AAGAAAAATC TGCCTGCATA CTGCCCTTGC
  AGGGGACACA CAGGTTCCAG CAACCATGTT GTGGGACTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147294776	ENSMUSSNP3370191	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52237556					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117695225 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14668	CpG island 14668			1273 bp distal
Gm17114	predicted gene 17114			within coordinates
Rr598226	regulatory region 598226			668 bp distal
Rr598227	regulatory region 598227			1333 bp proximal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9			Intron
				Noncoding-Transcript-Variant